Windows 10 1903 security keys

With the release of windows 10 1903 and 1909 Microsoft has implemented their own “windows security” popup that takes over when the yubikey is requested on a Duo protected website. The problem with this is when the windows popup is up users can not check the “remember me for X hours” checkbox. Also if users cancel the windows security popup it kills the duo flow and need to refresh the page.

This is causing a lot of frustrations for our users as most of them do not have a work provided cell phone and do not want to use their personal one so their only method of MFA is the security key. Does anyone know of a way to disable the windows security popup and let chrome handle the key?